Moving away from graphList
Added SyRI for single assembly comparison

Working on Syri figures for pggb inputs

Added script to generate syri figs from fasta files
Added syri figure for the all haplotypes (all in one)

Fixed fasta format from fixed columns sequences to 1 line sequences

Changed misleading column names in statistics files:
- time -> pggb.time
- cpu -> pggb.cpu
- mem -> pggb.mem

Changed path parsing from odgi path to a simple grep

v1.5

See merge request !10

Script to map short reads against a graph using vg giraffe

Fixed reference to old apptainer image

Using config.yaml, make some steps optional as PAV matrices creation

See : https://github.com/pangenome/PanSN-spec

Produce Panacus HTML reports for each chromosome

v1.4

See merge request !9